spindry

SpinDry package.

Classes

Atom

Atom.

Bond

Bond between two atoms.

Molecule

Molecule to optimize.

Potential

Base class for potential calculators.

SpdPotential

Default spindry non-bonded potential function.

Spinner

Generate host-guest conformations by rotating guest.

SupraMolecule

Representation of a supramolecule containing atoms and positions.

VaryingEpsilonPotential

A non-bonded potential function with varying epsilons.

Functions

calculate_centroid_distance

Calculate the centroid distances in 1:1 complex.

calculate_min_atom_distance

Calculate the minimum distance between components in supramolecule.

get_atom_distance

Return the distance between two atoms.